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bib:pflph
@Book{stoecker98,
  author =	 {St"ocker, Horst},
  title = 	 {Taschenbuch der Physik},
  publisher = 	 {Harri Deutsch},
  year = 	 1998,
  address =	 {Thun und Frankfurt am Main},
  edition =	 3
}

@Article{gilmore97,
  author = 	 {Gilmore, A. M.},
  title = 	 {Mechanistic aspects of xanthophyll cycle-dependent photoprotection in higher plant chloroplasts and leaves},
  journal = 	 {Physiologia Plantarum},
  year = 	 1997,
  volume =	 99,
  pages =	 {197-209}
}

@Article{burkhardt97,
  author = 	 {Peter K. Burkhardt AND Peter Beyer AND Joachim W"unn AND Andreas Kl"oti AND Gregory A. Armstrong AND Michael Schledz AND Johannes von Lintig AND Ingo Potrykus},
  title = 	 {Transgenic rice (Oryza sativa) endosperm expressing daffodil (Narcissus pseudonarcissus) phytoene synthase accumulates phytoene, a key intermediate of provitamin A biosynthesis},
  journal = 	 {Plant J},
  year = 	 1997,
  volume =	 11,
  number =	 5,
  pages =	 {1071--78}
}

@Book{thorpe95,
  editor =	 {Thorpe, Trevor A.},
  title = 	 {In vitro embryogenesis in plants},
  publisher = 	 {Kluwer},
  year = 	 1995,
  volume =	 20,
  series =	 {Current plant science and biotechnology in agriculture},
  address =	 {Dordrecht},
  edition =	 2
}

@Article{urao00,
  author = 	 {Urao, T AND Yamaguchi-Shinozaki, K AND Shinozaki, K},
  title = 	 {Two-component systems in plant signal transduction},
  journal = 	 {Trends in Plant Science},
  year = 	 2000,
  volume =	 5,
  number =	 2,
  pages =	 {67--74}
}

@Article{urao01,
  author = 	 {Urao, T AND Yamaguchi-Shinozaki, K AND Shinozaki, K},
  title = 	 {Plant Histidine Kinases: An Emerging Picture of Two-Component Signal Transduction in Hormone and Environmental Responses},
  journal = 	 {Science's stke},
  year = 	 2001,
  pages =	 {1--4}
}

@Article{lohrmann02,
  author = 	 {Lohrmann, J AND Harter, K},
  title = 	 {Plant Two--Component Signaling Systems and the Role of Response Regulators},
  journal = 	 {Plant Physiol.},
  year = 	 2002,
  volume =	 128,
  pages =	 {363--369}
}

@Article{stock00:_two,
  author = 	 {Stock, A. M. AND Robinson, V. L. AND Goudreau, P. N.},
  title = 	 {Two--Component Signal Transduction},
  journal = 	 {Annu. Rev. Biochem.},
  year = 	 2000,
  volume =	 69,
  pages =	 {183--215}
}

@Article{waterhouse99,
  author = 	 {Peter M. Waterhouse AND Neil A. Smith AND Ming-Bo Wang},
  title = 	 {Virus resistance and gene silencing: killing the messenger},
  journal = 	 {Trends in Plant Science},
  year = 	 1999,
  volume =	 4,
  number =	 11,
  pages =	 {452-457},
  abstract =     {On occassion, virus-derived transgenes in plants can be poorly expressed and yet provide excellent virus resistance, and transgene constructs designed to supplement the expression of endogenous genes can have the effect of co-suppressing themselves and the endogenous genes. These two phenomena appear to result from the same post-transcriptional silencing mechanism, which operates by targeted-RNA degradation. Recent research into RNA-mediated virus resistance and co-suppression has provided insights into the interactions between plant viruses and their hosts, and spawned several models to explain the phenomenon.}
}

@Article{stock00,
  author = 	 {Ann M. Stock AND Victoria L. Robinson AND Paul N. Goudreau},
  title = 	 {Two--Component Signal Transduction},
  journal = 	 {Annu. Rev. Biochem.},
  year = 	 2000,
  key =		 {gene expression, histidine protein kinase, phosphorylation, protein conformational change, response regulator},
  volume =	 69,
  pages =	 {183--215},
  abstract =     {Most prokaryotic signal-transduction systems and a few eukaryotic pathways use phosphotransfer schemes involving two conserved components, a histidine protein kinase and a response regulator protein. The histidine protein kinase, which is regulated by environmental stimuli, autophosphorylates at a histidine residue, creating a high-energy phosphoryl group that is subsequently transferred to an aspartate residue in the response regulator protein. Phosphorylation induces a conformational change in the regulatory domain that results in activation of an associated domain that effects the response. The basic scheme is highly adaptable, and numerous variations have provided optimization within specific signaling systems. The domains of two-component proteins are modular and can be integrated into proteins and pathways in a variety of ways, but the core structures and activities are maintained. Thus detailed analyses of a relatively small number of representative proteins provide a foundation for understanding this large family of signaling proteins.}
}


@Article{theissen96,
  author = 	 {Gu"unter Thei"sen AND Jan T. Kim AND Heinz Saedler},
  title = 	 {Classification and Phylogeny of the MADS-Box Multigene Family Suggest Defined Roles of MADS-Box Gene Subfamilies in the Morphological Evolution of Eukaryotes},
  journal = 	 {J Mol Evol},
  year = 	 1996,
  volume =	 43,
  pages =	 {484--516},
  abstract =     {The MADS-box encodes a novel type of DNA-binding domain found so far in a diverse group of transcription factors from yeast, animals, and seed plants. Here, our first aim was to evaluate the primary structure of the MADS-box. Compilation of the 107 currently available MADS-domain sequences resulted in a signature which can strictly discriminate between genes possessing or lacking a MADS-domain and allowed a classification of MADS-domain proteins into several distinct subfamilies. A comprehensive phylogenetic analysis of known eukaryotic MADS-box genes, which is the first comprising animal as well as fungal and plant homologs, showed that the vast majority of subfamily members appear on distinct subtrees of phylogenetic trees, suggesting that subfamilies represent monophyletic gene clades and providing the proposed classification scheme with a sound evolutionary basis. A reconstruction of the history of the MADS-box gene subfamilies based on the taxonomic distribution of contemporary subfamily members revealed that each subfamily comprises highly conserved putative orthologs and recent paralogs. Some subfamilies must be very old (1,000 MY or more), while others are more recent. In general, subfamily members tend to share highly similar sequences, expression patterns, and related functions. The defined species distribution, specific function, and strong evolutionary conservation of the members of most subfamilies suggest that the establishment of different subfamilies was followed by rapid fixation and was thus highly advantageous during eukaryotic evolution. These gene subfamilies may have been essential prerequisites for the establishment of several complex eukaryotic body structures, such as muscles in animals and certain reproductive structures in higher plants, and of some signal transduction pathways. Phylogenetic trees indicate that after establishment of different subfamilies, additional gene duplications led to a further increase in the number of MADS-box genes. However, several molecular mechanisms of MADS-box gene diversification were used to a quite different extent during animal and plant evolution. Known plant MADS-domain sequences diverged much faster than those of animals, and gene duplication and sequence diversification were extensively used for the creation of new genes during plant evolution, resulting in a relatively large number of interacting genes. In contrast, the available data on animal genes suggest that increase in gene number was only moderate in the lineage leading to mammals, but in the case of MEF2-like gene products, heterodimerization between different splice variants may have increased the combinatorial possibilities of interactions considerably. These observations demonstrate that in metazoan and plant evolution, increased combinatorial possibilities of MADS-box gene product interactions correlated with the evolution of increasingly complex body plans.}
}

@Article{ryan00,
  author = 	 {Clarence A. Ryan},
  title = 	 {The systemin signaling pathway: differential activation of plant defensive genes},
  journal = 	 {Biochim. Biophys. Acta},
  year = 	 2000,
  volume =	 1477,
  pages =	 {112--121}
}

@Article{leon01:_wound,
  author = 	 {L{\'e}on, J AND Rojo, E AND S{\'a}nchez--Serrano, JJ},
  title = 	 {Wound signalling in plants},
  journal = 	 {J Exp. Bot.},
  year = 	 2001,
  volume =	 52,
  number =	 354,
  pages =	 {1--9},
  month =	 1,
  key =		 {Jasmonic acid, systemin, oligosaccharides, protein phosphorylation, local and systemic responses},
  abstract =	 {Plants undergoing the onslaught of wound-causing agents activate mechanisms directed to healing and further defence. Responses to mechanical damage are either local or systemic or both and hence involve the generation, translocation, perception, and transduction of wound signals to activate the expression of wound-inducible genes. Although the central role for jasmonic acid in plant responses to wounding is well established, other compounds, including the oligopeptide systemin, oligosaccharides, and other phytohormones such as abscisic acid and ethylene, as well as physical factors such as hydraulic pressure or electrical pulses, have also been proposed to play a role in wound signalling. Different jasmonic aciddependent and ±independent wound signal transduction pathways have been identified recently and partially characterized. Components of these signalling pathways are mostly similar to those implicated in other signalling cascades in eukaryotes, and include reversible protein phosphorylation steps, calciumucalmodulin-regulated events, and production of active oxygen species. Indeed, some of these components involved in transducing wound signals also function in signalling other plant defence responses, suggesting that cross-talk events may regulate temporal and spatial activation of different defences. Key words: Jasmonic acid, systemin, oligosaccharides, protein phosphorylation, local and systemic responses.}
}

@Article{maxwell00:_chlor,
  author = 	 {Kate Maxwell AND Giles N. Johnson},
  title = 	 {Chlorophyll fluorescence---a practical guide},
  journal = 	 {J. Exp. Bot.},
  year = 	 2000,
  volume =	 51,
  number =	 345,
  pages =	 {659--668},
  month =	 4,
  keywords =	 {Chlorophyll flurescence, electron transport, photoinhibition},
  abstract =	 {Chlorophyll fluorescence analysis has become one of the most powerful and widely used techniques available to plant physiologists and ecophysiologists. This review aims to provide an introduction for the novice into the methodology and applications of chlorophyll fluorescence. After a brief introduction into the theoretical background of the technique, the methodology and some of the technical pitfalls that can be encountered are explained. A selection of examples is then used to illustrate the types of information that fluorescence can provide.}
}

@Article{osmond95:_persp,
  author = 	 {C.B. Osmond AND S.C. Grace},
  title = 	 {Perspectives on photoinhibition and photorespiration in the field: quintessential inefficiencies of the light and dark reactions of photosynthesis?},
  journal = 	 {J. Exp. Bot.},
  year = 	 1995,
  volume =	 46,
  number =	 {Special Issue},
  pages =	 {1351--1362},
  month =	 {September},
  keywords =	 {photoinhibition, photorespiration, photosynthesis, light reaction, dark reaction},
  abstract =	 {Taking the long-held view that photoinhibition embraces several processes leading to a reduction in the efficiency of light utilization in photosynthesis, and that photorespiration embraces several processes associated with O$_2$ uptake in the light, photoinhibition and photorespiration now can be considered as inveitable, but essential inefficiencies of photosynthesis which help preserve photosynthetic competence in bright light...}
}

@Article{cosgrove97:_assem_enlar_primar_cell_wall_plant,
  author = 	 {Daniel J. Cosgrove},
  title = 	 {Assembly and Enlargement of the Primary Cell Wall in Plants},
  journal = 	 {Annu. Rev. Cell Dev. Biol.},
  year = 	 1997,
  volume =	 13,
  pages =	 {171--201},
  keywords =	 {cellulose, expansin, extracellular matrix, plant cell growth, wall enzymes},
  abstract =	 {Growing plant cells are shaped by an extensiblewall that is a complex amalgam of cellulose microfibrils bonded noncovalently to a matrix of hemicelluloses, pectins, and structural proteins. Cellulose is synthesized by complexes in the plasma membrane and is extruded as a self-assembling microfibril, whereas the matrix polymers are secreted by the Golgi apparatus and become integrated into the wall network by poorly understood mechanisms. The growing wall is under high tensile stress from cell turgor and is able to enlarge by a combination of stress relaxation and polymer creep. A pH-dependent mechanism of wall loosening, knownas acid growth, is characteristic of growingwalls and is mediated by a group of unusual wall proteins called expansins. Expansins appear to disrupt the noncovalent bonding of matrix hemicelluloses to the microfibril, thereby allowing the wall to yield to the mechanical forces generated by cell turgor. Otherwall enzymes, such as (1$\to$4)$\beta$--glucanases and pectinases, may make the wall more responsive to expansin-mediatedwall creep, whereas pectin methylesterases and peroxidases may alter the wall so as to make it resistant to expansin-mediated creep.}
}

@Article{voznesenskaya01:_kranz_c,
  author = 	 {Voznesenskaya, EV AND Franceschi, VR AND Kiirats, O AND Freitag, H AND Edwards, GE},
  title = 	 {Kranz anatomy is not essential for terrestrial C$_{\mathsf{4}}$ plant photosynthesis},
  journal = 	 {Nature},
  year = 	 2001,
  volume =	 414,
  pages =	 {543--6}
}


@Article{freitag02:_bunge_boiss,
  author = 	 {Freitag, H AND Stichler, W},
  title = 	 {\emph{Bienertia cycloptera} Bunge ex Boiss., Chenopodiaceae, another C$_{\mathsf{4}}$ Plant without Kranz Tissues},
  journal = 	 {Plant biol.},
  year = 	 2002,
  volume =	 4,
  pages =	 {121--132}
}

@Article{hoffmann98:_oxygen,
  author = 	 {Paul Hoffmann},
  title = 	 {Oxygenic photosynthesis---a photon driven hydrogren generator---the energetic/entropic basis of life},
  journal = 	 {Photosynthetica},
  year = 	 1998,
  volume =	 35,
  number =	 1,
  pages =	 {1--11},
  keywords =	 {evolution, hydrogen, life, photosynthesis, radiant energy}
}

@Article{crick70:_centr_dogma,
  author = 	 {Crick, Francis},
  title = 	 {Central dogma of molecular biology},
  journal = 	 {Nature},
  year = 	 1970,
  volume =	 227,
  pages =	 {561--563}
}

@Article{temin70:_reverse_transcriptase,
  author = 	 {Temin, HM AND Mizutani, S},
  title = 	 {RNA-dependent DNA polymerase in virions of Rous sarcoma virus},
  journal = 	 {Nature},
  year = 	 1970,
  volume =	 226,
  number =	 252,
  pages =	 {1211--3},
  month =	 6
}

@Article{baltimore70:_reverse_transcriptase,
  author = 	 {Baltimore, D},
  title = 	 {RNA-dependent DNA polymerase in virions of RNA tumour viruses},
  journal = 	 {Nature},
  year = 	 1970,
  volume =	 226,
  number =	 252,
  pages =	 {1209--11},
  month =	 6
}

@Article{meselson58:_semiconservative_dna_replication,
  author = 	 {Meselson, M. AND F. W. Stahl},
  title = 	 {The replication of DNA in \emph{Escherichia coli}},
  journal = 	 {Proc. Natl. Acad. Sci.},
  year = 	 1958,
  volume =	 44,
  pages =	 {671--682}
}

@Article{watson_crick53a:_nature,
  author = 	 {Watson, J.D. AND Crick, F.H.C.},
  title = 	 {A Structure for Deoxyribose Nucleic Acid},
  journal = 	 {Nature},
  year = 	 1953,
  volume =	 171,
  month =        {Apr},
  pages =	 {737--738},
  annote =	 {The famous paper postulate the structure for DNA.}
}

@Article{watson_crick53b:_nature,
  author = 	 {Watson, J.D. AND Crick, F.H.C.},
  title = 	 {Genetical implications of the structure of desoxyribonucleic acid},
  journal = 	 {Nature},
  year = 	 1953,
  volume =	 171,
  month =        {May},
  pages =	 {964--967},
  annote =	 {The paper in which semiconservative DNA replication was first postulated.}
}

@Book{taiz02:_plant_physiol,
  author =	 {Lincoln Taiz AND Eduardo Zeiger},
  title = 	 {Plant Physiology},
  publisher = 	 {Sinauer Associates},
  year = 	 2002,
  address =	 {Sunderland},
  edition =	 3,
  month =	 {July}
}

@Book{fosket94:_plant_growth_devel,
  author =	 {Fosket, Donald E.},
  title = 	 {Plant Growth and Development},
  publisher = 	 {Academic Press},
  year = 	 1994,
  month =	 3
}

@Book{hemleben90:_molbio_pfl,
  author =	 {Vera Hemleben},
  title = 	 {Molekularbiologie der Pflanzen},
  publisher = 	 {UTB},
  year = 	 1990,
  address =	 {Stuttgart}
}

@Book{howell98:_mol_gen_plant_devel,
  author =	 {Stephen H. Howell},
  title = 	 {Molecular Genetics of Plant Development},
  publisher = 	 {Cambridge University Press},
  year = 	 1998,
  month =	 9
}

@Book{steeves89:_patterns_plant_devel,
  author =	 {Taylor A. Steeves AND Ian M. Sussex},
  title = 	 {Patterns in Plant Development},
  publisher = 	 {Cambridge University Press},
  year = 	 1989
}

@Book{kendrick95:_photomorphogenesis_plants,
  editor =	 {R.E. Kendrick AND G.H.M. Kronenberg},
  title = 	 {Photomorphogenesis in Plants: 2nd Edition},
  publisher = 	 {Kluwer Academic Publishers},
  year = 	 1995,
  edition =	 2,
  month =	 5
}

@Book{hooykaas99:_bioch_mol_bio_plant_hormones,
  editor =	 {P.J.J. Hooykaas AND M.A. Hall AND K.R. Libbenga},
  title = 	 {Biochemistry and Molecular Biology of Plant Hormones (New Comprehensive Biochemistry)},
  publisher = 	 {Elsevier},
  year = 	 1999
}

@Book{buchanan00:_bioch_mol_bio_plants,
  editor =	 {Buchanan, B. AND Gruissem, W. AND Jones, R.L.},
  title = 	 {Biochemistry and Molecular Biology of Plants},
  publisher = 	 {American Society of Plant Physiologists},
  year = 	 2000,
  address =	 {Rockville}
}

@Book{westhoff96:_molek_entwbio,
  editor =	 {Peter Westhoff AND Holger Jeske AND Gerd Jürgens},
  title = 	 {Molekulare Entwicklungsbiologie. Vom Gen zur Pflanze},
  publisher = 	 {Thieme},
  year = 	 1996,
  address =	 {Stuttgart}
}

@Book{raunkiaer34,
  author =	 {Raunkiaer, C.},
  title = 	 {The life forms of plants and statistic plant geography},
  publisher = 	 {Claredon Press},
  year = 	 1934,
  address =	 {Oxford},
  note =         {collected translated papers of C. Raunkiaer}
}

@Article{raunkiaer04,
  author = 	 {Raunkiaer, C.},
  title = 	 {Om biologiske Typer, med Hensyn til Planternes Tilpasning til at overleve ugunstige Aarstider},
  journal = 	 {Botanisk Tidsskrift},
  year = 	 1904,
  volume =	 26,
  annote =	 {traduction : Sur les types biologiques, avec références à l'adaptation des plantes à la survie en saison défavorable}
}

@Article{raunkiaer05,
  author = 	 {Raunkiaer, C.},
  title = 	 {Types biologiques pour la géographie botanique},
  journal = 	 {Bull. Acad. Roy. Sci. Lett. Danemark},
  year = 	 1905,
  volume =	 5,
  pages =	 {347--437}
}

@InCollection{raunkiaer05:_types,
  author = 	 {Raunkiaer, C.},
  title = 	 {Types biologiques pour la géographie botanique},
  booktitle = 	 {Bulletin de l'Année},
  publisher =	 {Académie Royale des Sciences et des Lettres du Danemark},
  year =	 1905,
  number =	 5,
  address =	 {Copenhagen}
}

@Article{raunkiaer19,
  author = 	 {Raunkiaer, C.},
  title = 	 {Recherches statistiques sur les formations végétales},
  journal = 	 {Kgl. Danske Vidensk. Selkob. Biöl. Meddel},
  year = 	 1919,
  volume =	 {I},
  number =	 3
}

@Book{raunkiaer07,
  author =	 {Raunkiaer, C.},
  title = 	 {Planterigets livsformer og deres Betydning for Geografien},
  publisher = 	 {Munksgaard},
  year = 	 1907,
  address =	 {Copenhagen},
  annote =	 {traduction : les types biologiques des plantes et leur apport en géographie}
}

@Article{ellenberg91:_zeigerwerte,
  author = 	 {Ellenberg, H. AND Weber, H.E. AND Düll, R. AND Wirth, V. AND Werner, W. AND Paulißen, D.},
  title = 	 {Zeigerwerte von Pflanzen in Mitteleuropa},
  journal = 	 {Scripta Geobotanica},
  year = 	 1991,
  pages =        "9-166",
  volume =	 18
}

@Book{marschner95:_mineral_nutrit_higher_plants,
  author =	 {Marschner, H.},
  title = 	 {Mineral Nutrition of Higher Plants},
  publisher = 	 {Acad. Press},
  year = 	 1995,
  address =	 {London}
}


@Book{bergmann92:_nutrit_disorders_plants,
  author =	 {Bergmann, W},
  title = 	 {Colour atlas nutritional disorders of plants: visual and analytical diagnosis},
  publisher = 	 {Fischer},
  year = 	 1992,
  address =	 {Stuttgart}
}

  @Article{borthwick52:_phytochrome,
  author = 	 {Borthwick, H. A. AND Hendricks, S. B. AND Parker, M. W. AND Toole, E. H. AND Toole, V. K.},
  title = 	 {A reversible photoreaction controlling seed germination},
  journal = 	 {Proc. Natl. Acad. Sci. USA},
  year = 	 1952,
  volume =	 38,
  pages =	 {662--666}
}

@Book{horton02:_bioch,
  author =	 {H. Robert Horton AND Laurence A. Moran AND Raymond S. Ochs AND J. David Rawn AND K. Gray Scrimgeour},
  title = 	 {Principles of Biochemistry},
  publisher = 	 {Prentice Hall},
  year = 	 2002,
  edition =	 3
}
@Article{agi00a:_arabidopsis_genome,
  author = 	 {{Arabidopsis Genome Initiative}},
  title = 	 {Analysis of the genome sequence of the flowering plant \emph{Arabidopsis thaliana}},
  journal = 	 {Nature},
  year = 	 2000,
  volume =	 408,
  pages =	 {796--815}
}

@Article{sutherland55:_second_messenger_concept,
  author = 	 {E.W. Sutherland AND W.B. Wosilait},
  title = 	 {Inactivation and activation of liver phosphorylase},
  journal = 	 {Nature},
  year = 	 1955,
  volume =	 175,
  pages =	 {169-70},
  annote =	 {the second messenger concept, proposed in 1955}
}

@Article{robinson67:_ade_cycl,
  author = 	 {Robinson, G. A. AND Butcher, T. W. AND Sutherland, E. W.},
  title = 	 {Adenylate cyclase as an adrenergic receptor},
  journal = 	 {Ann. N. Y. Acad. Sci.},
  year = 	 1967,
  volume =	 139,
  pages =	 {269-274}
}

@Article{sutherland60:_camp,
  author = 	 {Sutherland, E. W. AND Rall. T. W.},
  title = 	 {The relation of adenosine 3',5'-phosphate and phorphorylase to the actions of catecholamines and other hormones},
  journal = 	 {Pharmac. Rev.},
  year = 	 1960,
  volume =	 12,
  pages =	 {265-300}
}

@Article{sutherland72:_science,
  author = 	 {Sutherland, E. W.},
  title = 	 {Studies on the mechanism of hormone action},
  journal = 	 {Science},
  year = 	 1972,
  volume =	 177,
  number =	 44,
  pages =	 {401--8},
  month =	 {Aug}
}

@InCollection{robison71:_cyclic_amp,
  author = 	 {Robison, G.A. AND Butcher, R.W. AND Sutherland, E.W.},
  title = 	 {Cyclic AMP and hormone action},
  booktitle = 	 {Cyclic AMP},
  pages =	 {17--47},
  publisher =	 {Academic Press},
  year =	 1971,
  address =	 {New York},
  annote =	 {Was the basis for Sutherlands Nobel Prize}
}

@Article{sutherland62:_adeny_cyclase_i,
  author = 	 {Sutherland, E.W. AND T.W. Rall AND T. Menon},
  title = 	 {Adenyl cyclase I. Distribution, preparation and properties},
  journal = 	 {J. Biol. Chem.},
  year = 	 1962,
  volume =	 237,
  pages =	 {1120-1227}
}

@Article{sutherland66:_camp,
  author = 	 {EW Sutherland AND GA Robison},
  title = 	 {The role of cyclic-3',5'-AMP in responses to catecholamines and other hormones},
  journal = 	 {Pharmacol. Rev.},
  year = 	 1966,
  volume =	 18,
  pages =	 {145--161}
}


@article{assmann95:_camp,
author = {Assmann, S. M.},
title = {Cyclic AMP as a Second Messenger in Higher Plants (Status and Future Prospects)},
journal = {Plant Physiol.},
volume = 108,
number = 3,
pages = {885-889},
year = 1995,
},
URL = {http://www.plantphysiol.org},
eprint = {http://www.plantphysiol.org/cgi/reprint/108/3/885.pdf}
}



##################################################
# Calcium / Calmodulin

@Article{roberts92:_calcium_modulated_proteins,
  author = 	 {Roberts, D.M. AND A.C. Harmon},
  title = 	 {Calcium-modulated proteins: targets of intracellular calcium signals in higer plants},
  journal = 	 {Annu. Rev. Plant Physiol Plant Mol Biol.},
  year = 	 1992,
  volume =	 43,
  pages =	 {375--414},
  annote =	 {A good introduction to calmodulin in higher plants. The review also discusses calcium-dependent protein kinases.}
}

@Article{roberts93:_pk_calmodulin,
  author = 	 {Roberts, D.M.},
  title = 	 {Protein kinases with calmodulin-like domains: novel targets of calcium signals in plants},
  journal = 	 {Curr. Opin. Cell Biol.},
  year = 	 1993,
  volume =	 5,
  pages =	 {242--246},
  annote =	 {A concise introduction to calcium-dependent protein kinase in plants}
}

@Article{snedden98:_calmod,
  author = 	 {Snedden, W.A. and Fromm, H.},
  title = 	 {Calmodulin, calmodulin--related proteins and plant responses to the environment},
  journal = 	 {Trends Plant Sci},
  year = 	 1998,
  volume =	 3,
  pages =	 {299--304}
}

@Article{babu98:_struc_cam,
  author = 	 {Y.S. Babu and C.E. Bugg and W.J. Cook},
  title = 	 {Structure of calmodulin refined at 2.2 {\AA} resolution},
  journal = 	 {J. Mol. Biol.},
  year = 	 1998,
  volume =	 204,
  pages =	 {191--204}
}

@Article{o'neil90:_cam_target_binding,
  author = 	 {K.T. O'Neil and W.F. DeGrado},
  title = 	 {How calmodulin binds its targets: sequence--independent recognition of amphiphilic $\alpha$--helices},
  journal = 	 {Trends Biochem. Sci.},
  year = 	 1990,
  volume =	 15,
  pages =	 {59--64}
}

@Article{zielinski98:_calmod_calmod_bindin_protein_plant,
  author = 	 {Raymond E. Zielinski},
  title = 	 {Calmodulin and Calmodulin-Binding Proteins in Plants},
  journal = 	 {Annual Review of Plant Physiology and Plant Molecular Biology},
  year = 	 1998,
  volume =	 49,
  pages =	 697,
  month =	 {June}
}

@article{luan02:_cam_cbl_plants,
author = {Luan, Sheng and Kudla, Jorg and Rodriguez-Concepcion, Manuel and Yalovsky, Shaul and Gruissem, Wilhelm},
title = {{Calmodulins and Calcineurin B-like Proteins: Calcium Sensors for Specific Signal Response Coupling in Plants}},
journal = {Plant Cell},
volume = 14,
number = 90001,
pages = {S389--400},
year = 2002,
},
URL = {http://www.plantcell.org},
eprint = {http://www.plantcell.org/cgi/reprint/14/suppl_1/S389.pdf}
}

@article{duval02:_cam_isoforms,
author = {Duval,Frederic D. and Renard,Michelle and Jaquinod,Michel and Biou,Valerie and Montrichard,Francoise and Macherel,David},
title = {Differential expression and functional analysis of three calmodulin isoforms in germinating pea (\emph{Pisum sativum} L.) seeds},
journal = {Plant J},
volume = 32,
number = 4,
pages = {481--481},
year = 2002,
URL = {http://www.blackwell-synergy.com/links/doi/10.1046/j.1365-313X.2002.01409.x/abs},
eprint = {http://www.blackwell-synergy.com/links/doi/10.1046/j.1365-313X.2002.01409.x/pdf}
}

@Article{yang03:_ca_network_plants,
  author = 	 {Tianbao Yang and B.W. Poovaiah},
  title = 	 {Calcium/calmodulin--mediated signal network in plants},
  journal = 	 {Trends in Plant Science},
  year = 	 2003,
  volume =	 8,
  number =	 10,
  pages =	 {505--512},
  month =	 {October}
}

@Article{harper91:_cdpk,
  author = 	 {Harper, J.F. and Sussman, M.R. and Schaller, G.E. and Putnanm--Evans, C. and Charbonneau, H. and Harmon, A.C.},
  title = 	 {A calcium--dependent protein kinase with a regulatory domain similar to calmodulin},
  journal = 	 {Science},
  year = 	 1991,
  volume =	 252,
  pages =	 {951--954}
}

@Article{harper01:_ca_oscill_plants,
  author = 	 {Jeffrey F. Harper},
  title = 	 {Dissecting calcium oscillators in plant cells},
  journal = 	 {Trends in Plant Science},
  year = 	 2001,
  volume =	 6,
  number =	 9,
  pages =	 {395--397},
  month =	 {September}
}

@Article{zhang03:_cbk,
  author = 	 {Lei Zhang and Ying--Tang Lu},
  title = 	 {Calmodulin--binding protein kinases in plants},
  journal = 	 {Trends in Plant Science},
  year = 	 2003,
  volume =	 8,
  number =	 3,
  pages =	 {123--127},
  month =	 {March}
}

@article{sanders02:_calcium_cross_signal,
author = {Sanders, Dale and Pelloux, Jerome and Brownlee, Colin and Harper, Jeffrey F.},
title = {{Calcium at the Crossroads of Signaling}},
journal = {Plant Cell},
volume = 14,
number = 90001,
pages = {S401-417},
year = 2002,
},
URL = {http://www.plantcell.org},
eprint = {http://www.plantcell.org/cgi/reprint/14/suppl_1/S401.pdf}
}

@Article{sanders99:_commun_calcium,
  author = 	 {Sanders, Dale and Brownlee, Colin and Harper, Jeffrey F.},
  title = 	 {Communicating with Calcium},
  journal = 	 {Plant Cell},
  year = 	 1999,
  volume =	 11,
  pages =	 {691--706},
  month =	 {April}
}

@Book{thomas82:_tech_calcium_res,
  author =	 {Thomas, M.V.},
  title = 	 {Techniques in Calcium Research},
  publisher = 	 {Academic Press},
  year = 	 1982,
  address =	 {London}
}

@Article{reddy01:_calcium_plants,
  author = 	 {A. S. N. Reddy},
  title = 	 {Calcium: silver bullet in signaling},
  journal = 	 {Plant Sci},
  year = 	 2001,
  volume =	 160,
  pages =	 {381--404}
}

@Article{trewavas98:_ca_signalling_plants,
  author = 	 {Anthony J Trewavas and Rui Malh{\'o}},
  title = 	 {Ca$^{2+}$ signalling in plant cells: the big network!},
  journal = 	 {Current Opinion in Plant Biology},
  year = 	 1998,
  volume =	 1,
  number =	 5,
  pages =	 {428--433}
}

@Article{trewavas99:_how_plants_learn,
  author = 	 {Trewavas, A.J.},
  title = 	 {How plants learn},
  journal = 	 {Proc. Natl. Acad. Sci. USA},
  year = 	 1999,
  volume =	 96,
  pages =	 {4216--4218}
}

@Article{franklin--tong96:_growth_pollen_tubes,
  author = 	 {Franklin--Tong, V.E. and Trobak, B.K. and Watkins, P.A.C. and Trewavas, A.J.},
  title = 	 {Growth of pollen tubes of \emph{Papaver rhoeas} is regulated by a slow moving calcium wave propagated by inositol 1,4,5--triphosphate},
  journal = 	 {Plant Cell},
  year = 	 1996,
  volume =	 8,
  pages =	 {1305--1321}
}

@Article{holdaway--clarke97:_pollen_tube_growth,
  author = 	 {Holdaway--Clarke, T.L. and Feijo, J.A. and Hackett, G.R. and Kunkel, J.G. and Hepler, P.K.},
  title = 	 {Pollen tube growth and the intracellular cytosolic calcium gradient oscillate in phase while extracellular calcium influx is delayed},
  journal = 	 {Plant Cell},
  year = 	 1997,
  volume =	 9,
  pages =	 {1999--2010}
}

@Article{li98:_ca_spike_frequency,
  author = 	 {Li, W. and Llopis, J. an dWhitnwy, M. and Zlokarnik, G. and Tsien, R.Y.},
  title = 	 {Cell--permeant caged InsP3 ester shows that Ca$^{2+}$ spike frequency can optimize gene expression},
  journal = 	 {Nature},
  year = 	 1998,
  volume =	 392,
  pages =	 {936--941}
}

@Article{dolmetsch98:_calcium_oscillations,
  author = 	 {Dolmetsch, R.E. and Xu, K. and Lewis, R.S.},
  title = 	 {Calcium oscillations increase the efficiency and specifity of gene expression},
  journal = 	 {Nature},
  year = 	 1998,
  volume =	 392,
  pages =	 {933--936}
}

@article{cheng02:_ca_signal_pk,
author = {Cheng, Shu-Hua and Willmann, Matthew R. and Chen, Huei-Chi and Sheen, Jen},
title = {{Calcium Signaling through Protein Kinases. The Arabidopsis Calcium-Dependent Protein Kinase Gene Family}},
journal = {Plant Physiol.},
volume = 129,
number = 2,
pages = {469-485},
year = 2002,
abstract = {In plants, numerous Ca2+-stimulated protein kinase activities occur through calcium-dependent protein kinases (CDPKs). These novel calcium sensors are likely to be crucial mediators of responses to diverse endogenous and environmental cues. However, the precise biological function(s) of most CDPKs remains elusive. The Arabidopsis genome is predicted to encode 34 different CDPKs. In this Update, we analyze the Arabidopsis CDPK gene family and review the expression, regulation, and possible functions of plant CDPKs. By combining emerging cellular and genomic technologies with genetic and biochemical approaches, the characterization of Arabidopsis CDPKs provides a valuable opportunity to understand the plant calcium-signaling network.
},
URL = {http://www.plantphysiol.org/cgi/content/abstract/129/2/469},
eprint = {http://www.plantphysiol.org/cgi/reprint/129/2/469.pdf}
}

@Article{harmon00:_cdpks,
  author = 	 {Alice C. Harmon and Michael Gribskov and Jeffrey F. Harper},
  title = 	 {CDPKs --- a kinase for every Ca$^{2+}$ signal?},
  journal = 	 {Trends in Plant Science},
  year = 	 2000,
  volume =	 5,
  number =	 4,
  pages =	 {154--159},
  month =	 {April},
  abstract =	 {Numerous stimuli can alter the Ca$^{2+}$concentration in the cytoplasm, a factor common to many physiological responses in plant and animal cells. Calcium-binding proteins decode information contained in the temporal and spatial patterns of these Ca$^{2+}$ signals and bring about changes in metabolism and gene expression. In addition to calmodulin, a calcium-binding protein found in all eukaryotes, plants contain a large family of calcium-binding regulatory protein kinases. Evidence is accumulating that these protein kinases participate in numerous aspects of plant growth and development.}
}


@Article{shacklock92:_cytosolic_free_ca,
  author = 	 {Shacklock, P.S. and Read, N.D. and Trewavas, A.J.},
  title = 	 {Cytosolic free calcium mediates red light induced photomorphogenesis},
  journal = 	 {Nature},
  year = 	 1992,
  volume =	 358,
  pages =	 {153--155}
}

@Article{mcainsh90:_aba_induced_cyt_ca,
  author = 	 {McAinsh, M.R. and Brownlee, C. and Hetheringtin, A.M.},
  title = 	 {Abscisic acid--induced elevation of guard cell cytosolic Ca$^{2+}$ precedes stomatal closure},
  journal = 	 {Nature},
  year = 	 1990,
  volume =	 343,
  pages =	 {186--188}
}

@Article{bush88:_cyt_ca_a_amylase,
  author = 	 {Bush, D. S. and Jones, R. L.},
  title = 	 {Cytoplasmic calcium and $\alpha$--amylase secretion from barley aleurone protoplasts},
  journal = 	 {Eur. J. Cell Biol.},
  year = 	 1988,
  volume =	 46,
  pages =	 {466--469}
}

@Article{knight97:_ca_drought_salinity,
  author = 	 {Knight, H. and Trewavas, A.J. and Knight, M.R.},
  title = 	 {Calcium signaling in \emph{Arabidopsis thaliana} responding to drought and salinity},
  journal = 	 {Plant J},
  year = 	 1997,
  volume =	 12,
  pages =	 {1067--1078}
}

@Article{knight91:_ca_cold_shock,
  author = 	 {Knight, M.R. and Campbell, A.K. and Smith, S.M. and Trewavas, A.J.},
  title = 	 {Transgenic plant aequorin reports the effects of cold shock and elicitors on cytoplasmic calcium},
  journal = 	 {Nature},
  year = 	 1991,
  volume =	 352,
  pages =	 {524--526}
}

@Article{knight96:_ca_cold,
  author = 	 {Knight, H. and Trewavas, A.J. and Knight, M.R.},
  title = 	 {Cold calcium signaling in Arabidopsis involves two cellular pools and a change in calcium signature after acclimation},
  journal = 	 {Plant Cell},
  year = 	 1996,
  volume =	 8,
  pages =	 {489--503}
}

@Article{taylor96:_spatial_ca_organization,
  author = 	 {Taylor, A.R. and Maison, N.F.H. and Fernandez. C. and Wood, J.W. and Brownlee, C.},
  title = 	 {Spatial organization of calcium signaling involved in cell volume control in the \emph{Fucus} rhizoid},
  journal = 	 {Plant Cell},
  year = 	 1996,
  volume =	 8,
  pages =	 {2015--2031}
}

@Article{gong98:_heat_shock_ca,
  author = 	 {Gong, M and Van de Luit, A.H. and Knight, M.R. and Trewavas, A.J.},
  title = 	 {Heat--shock--induced changes in intracellular Ca$^{2+}$ level in tobacco seedlings in relation to thermotolerance},
  journal = 	 {Plant Physiology},
  year = 	 1998,
  volume =	 116,
  pages =	 {429--437}
}

@Article{price94:_oxidative_signals_ca,
  author = 	 {Price, A.H. and Taylor, A. and Ripley, S.J. and Griffiths, A. and Trewavas, A.J. and Knight, M.R.},
  title = 	 {Oxidative signals in tobacco increase cytosolic calcium},
  journal = 	 {Plant Cell},
  year = 	 1994,
  volume =	 6,
  pages =	 {1301--1310}
}

@Article{ehrhardt96:_calcium_spiking_roots,
  author = 	 {Ehrhardt, D.W. and Wais, R. and Long, S.R.},
  title = 	 {Calcium spiking in plant root hairs responding to \emph{Rhizobium} nodulation signals},
  journal = 	 {Cell},
  year = 	 1996,
  volume =	 85,
  pages =	 {673--681}
}

@Article{durr98:_secretory_pathway,
  author = 	 {Durr, G. and Strayle, J. and Plemper, R. and Elbs, S. and Klee, S.K. and Catty, P. and Wolf, D.H. and Rudolph, H.K.},
  title = 	 {The media--Golgi ion pump Pmr1 supplies the yeast secretory pathway with Ca$^{2+}$ and Mn$^{2+}$ required for glycosylation, sorting, and endoplasmatic reticulum--associated protein degradation},
  journal = 	 {Mol. Biol. Cell},
  year = 	 1998,
  volume =	 9,
  pages =	 {1149--1162}
}

##################################################
# G-PROTEINS

@article{fujisawa01:_struc_funct_heter_g_protein_plant,
author = {Fujisawa, Yukiko and Kato, Hisaharu and Iwasaki, Yukimoto},
title = {{Structure and Function of Heterotrimeric G Proteins in Plants}},
journal = {Plant Cell Physiol.},
volume = 42,
number = 8,
pages = {789-794},
year = 2001,
abstract = {Heterotrimeric G proteins are mediators that transmit the external signals via receptor molecules to effector molecules. The G proteins consist of three different subunits: {alpha}, {beta}, and {gamma} subunits. The cDNAs or genes for all the {alpha}, {beta}, and {gamma} subunits have been isolated from many plant species, which has contributed to great progress in the study of the structure and function of the G proteins in plants. In addition, rice plants lacking the {alpha} subunit were generated by the antisense method and a rice mutant, Daikoku d1, was found to have mutation in the {alpha}-subunit gene. Both plants show abnormal morphology such as dwarfism, dark green leaf, and small round seed. The findings revealed that the G proteins are functional molecules regulating some body plans in plants. There is evidence that the plant G proteins participate at least in signaling of gibberellin at low concentrations. In this review, we summarize the currently known information on the structure of plant heterotrimeric G proteins and discuss the possible functions of the G proteins in plants.
},
URL = {http://pcp.oupjournals.org/cgi/content/abstract/42/8/789},
eprint = {http://pcp.oupjournals.org/cgi/reprint/42/8/789.pdf}
}

@article{assmann02:_heter_uncon_gtp_bindin_protein,
author = {Assmann, Sarah M.},
title = {{Heterotrimeric and Unconventional GTP Binding Proteins in Plant Cell Signaling}},
journal = {Plant Cell},
volume = 14,
number = 90001,
pages = {S355--373},
year = 2002,
URL = {http://www.plantcell.org},
eprint = {http://www.plantcell.org/cgi/reprint/14/suppl_1/S355.pdf}
}

@Article{yang02:_small_gtpases,
  author = 	 {Zhenbiao Yang},
  title = 	 {Small GTPases: Versatile Signaling Switches in Plants},
  journal = 	 {The Plant Cell},
  year = 	 2002,
  volume =	 14,
  number =	 {supplement},
  pages =	 {S375--388},
  URL =          {http://www.plantcell.org},
  eprint =       {http://www.plantcell.org/cgi/reprint/14/suppl_1/S375.pdf}
}

@Article{zheng00:_rop_gtpase,
  author = 	 {Zheng, Z.-L. and Yang, Z.},
  title = 	 {The Rop GTPase: An emerging signaling switch in plants.},
  journal = 	 {Plant Mol. Biol.},
  year = 	 2000,
  volume =	 44,
  pages =	 {1--9}
}

@Article{takai01:_small_gtp_bind_prot,
  author = 	 {Takai, Y. and Sasaki, T. and Matozaki, T.},
  title = 	 {Small GTP--bindung proteins},
  journal = 	 {Physiol. Rev.},
  year = 	 2001,
  volume =	 81,
  pages =	 {153--208}
}

@article{mason00:_compl,
author = {Mason, Michael G. and Botella, Jose R.},
title = {{Completing the heterotrimer: Isolation and characterization of an Arabidopsis thaliana G protein gamma -subunit cDNA}},
journal = {PNAS},
volume = 97,
number = 26,
pages = {14784-14788},
year = 2000,
abstract = {},
URL = {http://www.pnas.org/cgi/content/abstract/97/26/14784},
eprint = {http://www.pnas.org/cgi/reprint/97/26/14784.pdf}
}

@Article{mason01:_isolat_g_arabid_gbeta,
  author = 	 {Mason, Michael G. and Botella, Jose R.},
  title = 	 {Isolation of a novel G-protein gamma-subunit from Arabidopsis thaliana and its interaction with Gbeta},
  journal = 	 {Biochim Biophys Acta},
  year = 	 2001,
  volume =	 1520,
  number =	 2,
  pages =	 {147--53},
  month =	 {Aug 30},
  abstract =	 {There is increasing evidence that heterotrimeric G-proteins (G-proteins) are involved in many plant processes including phytohormone response, pathogen defence and stomatal control. In animal systems, each of the three G-protein subunits belong to large multigene families; however, few subunits have been isolated from plants. Here we report the cloning of a second plant G-protein gamma-subunit (AGG2) from Arabidopsis thaliana. The predicted AGG2 protein sequence shows 48\% identity to the first identified Arabidopsis Ggamma-subunit, AGG1. Furthermore, AGG2 contains all of the conserved characteristics of gamma-subunits including a small size (100 amino acids, 11.1 kDa), C-terminal CAAX box and a N-terminal alpha-helix region capable of forming a coiled-coil interaction with the beta-subunit. A strong interaction between AGG2 and both the tobacco (TGB1) and Arabidopsis (AGB1) beta-subunits was observed in vivo using the yeast two-hybrid system. The strong association between AGG2 and AGB1 was confirmed in vitro. Southern and Northern analyses showed that AGG2 is a single copy gene in Arabidopsis producing two transcripts that are present in all tissues tested. The isolation of a second gamma-subunit from A. thaliana indicates that plant G-proteins, like their mammalian counterparts, may form different heterotrimer combinations that presumably regulate multiple signal transduction pathways.}
}

@article{shiu01:_recep_arabid,
author = {Shiu, Shin-Han and Bleecker, Anthony B.},
title = {{Receptor--like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases}},
journal = {PNAS},
volume = 98,
number = 19,
pages = {10763-10768},
year = 2001,
abstract = {Plant receptor-like kinases (RLKs) are proteins with a predicted signal sequence, single transmembrane region, and cytoplasmic kinase domain. Receptor-like kinases belong to a large gene family with at least 610 members that represent nearly 2.5% of Arabidopsis protein coding genes. We have categorized members of this family into subfamilies based on both the identity of the extracellular domains and the phylogenetic relationships between the kinase domains of subfamily members. Surprisingly, this structurally defined group of genes is monophyletic with respect to kinase domains when compared with the other eukaryotic kinase families. In an extended analysis, animal receptor kinases, Raf kinases, plant RLKs, and animal receptor tyrosine kinases form a well supported group sharing a common origin within the superfamily of serine/threonine/tyrosine kinases. Among animal kinase sequences, Drosophila Pelle and related cytoplasmic kinases fall within the plant RLK clade, which we now define as the RLK/Pelle family. A survey of expressed sequence tag records for land plants reveals that mosses, ferns, conifers, and flowering plants have similar percentages of expressed sequence tags representing RLK/Pelle homologs, suggesting that the size of this gene family may have been close to the present-day level before the diversification of land plant lineages. The distribution pattern of four RLK subfamilies on Arabidopsis chromosomes indicates that the expansion of this gene family is partly a consequence of duplication and reshuffling of the Arabidopsis genome and of the generation of tandem repeats.
},
URL = {http://www.pnas.org/cgi/content/abstract/98/19/10763},
eprint = {http://www.pnas.org/cgi/reprint/98/19/10763.pdf}
}

@article{moutinho01,
author = {Moutinho, Ana and Hussey, Patrick J. and Trewavas, Anthony J. and Malho, Rui},
title = {{cAMP acts as a second messenger in pollen tube growth and reorientation}},
journal = {PNAS},
volume = 98,
number = 18,
pages = {10481-10486},
year = 2001,
abstract = {Pollen tube growth and reorientation is a prerequisite for fertilization and seed formation. Here we report imaging of cAMP distribution in living pollen tubes microinjected with the protein kinase A-derived fluorosensor. Growing tubes revealed a uniform distribution of cAMP with a resting concentration of [approx]100-150 nM. Modulators of adenylyl cyclase (AC), forskolin, and dideoxyadenosine could alter these values. Transient elevations in the apical region could be correlated with changes in the tube-growth axis, suggesting a role for cAMP in polarized growth. Changes in cAMP arise through the activity of a putative AC identified in pollen. This signaling protein shows homology to functional motifs in fungal AC. Expression of the cDNA in Escherichia coli resulted in cAMP increase and complemented a catabolic defect in the fermentation of carbohydrates caused by the absence of cAMP in a cyaA mutant. Antisense assays performed with oligodeoxynucleotide probes directed against conserved motifs perturbed tip growth, suggesting that modulation of cAMP concentration is vital for tip growth.
},
URL = {http://www.pnas.org/cgi/content/abstract/98/18/10481},
eprint = {http://www.pnas.org/cgi/reprint/98/18/10481.pdf}
}

###########################################################################
#  BIOINFORMATICS

@Book{durbin98:_biological_sequence_analysis,
  author =	 {Richard Durbin and Sean R. Eddy and Anders Krogh and Graeme Mitchison},
  title = 	 {Biological sequence analysis},
  publisher = 	 {Cambridge University Press},
  year = 	 1998,
  address =	 {Cambridge}
}

@Book{li97:_mol_evol,
  author =	 {Wen--Hsiung Li},
  title = 	 {Molecular Evolution},
  publisher = 	 {Sinauer Associates},
  year = 	 1997,
  address =	 {Sunderland}
}

@Book{baldi01a:_bioinformatics,
  author =	 {Pierre Baldi and S{\o}ren Brunak},
  title = 	 {Bioinformatics},
  publisher = 	 {MIT Press},
  year = 	 2001,
  series =	 {Adaptive Computation and Machine Learning},
  address =	 {Massachusetts},
  edition =	 2
}

@Article{becraft01:_plant_steroids,
  author = 	 {Philip W. Becraft},
  title = 	 {Plant steroids recognized at the cell surface},
  journal = 	 {Trends in Genetics},
  year = 	 2001,
  volume =	 17,
  number =	 2,
  pages =	 {60--62},
  month =	 {February}
}

@Article{giraudat95a:_aba,
  author = 	 {J\'er\^ome Giraudat},
  title = 	 {Abscisic acid signaling},
  journal = 	 {Current Opinion in Cell Biology},
  year = 	 1995,
  volume =	 7,
  pages =	 {232--238}
}

@Article{walker94:_plant_rlk,
  author = 	 {John C Walker},
  title = 	 {Structure and function of the receptor--like protein kinases of higher plants},
  journal = 	 {Plant Mol. Biol.},
  year = 	 1994,
  volume =	 26,
  pages =	 {1599--1609}
}

@Article{morris03:_rlk,
  author = 	 {Erin R Morris and John C Walker},
  title = 	 {Receptor-like protein kinases: the keys to response},
  journal = 	 {Current Opinion in Plant Biology},
  year = 	 2003,
  volume =	 6,
  number =	 4,
  pages =	 {339-342},
  month =	 {August}
}

###########################################################################
# TWO-COMPONENT SYSTEMS IN EUKARYOTIC ORGANISMS

@Article{chang93:_arabid_etr1,
  author = 	 {Chang, C and Kwok, SF and Bleecker, AB and Meyerowitz, EM},
  title = 	 {Arabidopsis ethylene response gene ETR1: similarity of product to two--component regulators},
  journal = 	 {Science},
  year = 	 1993,
  volume =	 262,
  pages =	 {539--544}
}

@Article{schneider-poetsch92:_st_phytochrome,
  author = 	 {Schneider--Poetsch, HAW},
  title = 	 {Signal transduction by phytochrome: Phytochromes have a module related to the transmitter modules of bacterial sensor proteins},
  journal = 	 {Photochem Photobiol},
  year = 	 1992,
  volume =	 56,
  pages =	 {839--846}
}

@Article{ota93:_yeast_two_component_regulator,
  author = 	 {Ota, IM and Varshavsky, A},
  title = 	 {A yeast protein similar to bacterial two--component regulators},
  journal = 	 {Science},
  year = 	 1993,
  volume =	 262,
  pages =	 {566--569}
}

@Article{mizuno97:_ecoli_two_component_genes,
  author = 	 {Mizuno, T.},
  title = 	 {Compilation of all genes encoding two-component phosphotransfer signal transducers in the genome of Escherichia coli},
  journal = 	 {DNA Res},
  year = 	 1997,
  volume =	 4,
  number =	 2,
  pages =	 {161--8},
  month =	 {Apr 28},
  abstact =	 {Bacteria have devised sophisticated His-Asp phosphorelay signaling systems for eliciting a variety of adaptive responses to their environment, which are generally referred to as the "two-component regulatory system." The widespread occurrence of the His-Asp phosphorelay signaling in both prokaryotes and eukaryotes implies that it is a powerful device for a wide variety of adaptive responses of cells to their environment. The two-component signal transducers contain one or more of three common and characteristic phosphotransfer signaling domains, named the "transmitter, receiver, and histidine-containing phosphotransfer (HPt) domains." The recently determined entire genomic sequence of Escherichia coli allowed us to compile systematically a complete list of genes encoding such two-component signal transduction proteins. The results of such an effort, made in this study, revealed that at least 62 open reading frames (ORFs) were identified as putative members of the two-component signal transducers in this single species. Among them, 32 were identified as response regulator and 23 were identified as orthodox sensory kinases. In addition, E. coli has five hybrid sensory kinases. The precise location of each ORF was mapped on a physical map of the entire E. coli genome. All of these ORFs were then compiled and annotated extensively.}
}

@Article{hua95:_ethyl_insen_confer_arabid_ers_gene,
  author = 	 {J. Hua and C. Chang and Q. Sun and E. M. Meyerowitz},
  title = 	 {Ethylene Insensitivity Conferred by Arabidopsis ERS Gene},
  journal = 	 {Science},
  year = 	 1995,
  volume =	 269,
  number =	 5231,
  pages =	 {1712--14},
  month =	 {September}
}

@article{hall00:_ethyl_percep_ers1_protein_arabid,
author = {Hall, Anne E. and Findell, Jennifer L. and Schaller, G. Eric and Sisler, Edward C. and Bleecker, Anthony B.},
title = {{Ethylene Perception by the ERS1 Protein in Arabidopsis}},
journal = {Plant Physiol.},
volume = 123,
number = 4,
pages = {1449-1458},
year = 2000,
abstract = {Ethylene perception in Arabidopsis is controlled by a family of five genes, including ETR1, ERS1 (ethylene response sensor 1), ERS2, ETR2, and EIN4. ERS1, the most highly conserved gene with ETR1, encodes a protein with 67% identity to ETR1. To clarify the role of ERS1 in ethylene sensing, we biochemically characterized the ERS1 protein by heterologous expression in yeast. ERS1, like ETR1, forms a membrane-associated, disulfide-linked dimer. In addition, yeast expressing the ERS1 protein contains ethylene-binding sites, indicating ERS1 is also an ethylene-binding protein. This finding supports previous genetic evidence that isoforms of ETR1 also function in plants as ethylene receptors. Further, we used the ethylene antagonist 1-methylcyclopropene (1-MCP) to characterize the ethylene-binding sites of ERS1 and ETR1. We found 1-MCP to be both a potent inhibitor of the ethylene-induced seedling triple response, as well as ethylene binding by yeast expressing ETR1 and ERS1. Yeast expressing ETR1 and ERS1 showed nearly identical sensitivity to 1-MCP, suggesting that the ethylene-binding sites of ETR1 and ERS1 have similar affinities for ethylene.
},
URL = {http://www.plantphysiol.org/cgi/content/abstract/123/4/1449},
eprint = {http://www.plantphysiol.org/cgi/reprint/123/4/1449.pdf}
}



###########################################################################
# LRR Proteins

@Article{buchanan96:_lrr_prot,
  author = 	 {Sean G. St. C. Buchanan and Nicholas J. Gay},
  title = 	 {Structural and functional diversity in the leucine-rich repeat family of proteins},
  journal = 	 {Progress in Biophysics and Molecular Biology},
  year = 	 1996,
  volume =	 65,
  number =	 1,
  pages =	 {1--44}
}

###########################################################################
# RETRACTED PAPER - AC

@Article{ichikawa97:_plant_ac,
  author = 	 {Takanari Ichikawa and Yoshihito Suzuki and Inge Czaja and Carla Schommer and Angela Leßnick and Jeff Schell and Richard Walden},
  title = 	 {Identification and role of adenylyl cyclase in auxin signalling in higher plants},
  journal = 	 {Nature},
  year = 	 1997,
  volume =	 390,
  pages =	 {698--701}
}

@Article{ichikawa98:_plant_ac,
  author = 	 {Takanari Ichikawa and Yoshihito Suzuki and Inge Czaja and Carla Schommer and Angela Leßnick and Jeff Schell and Richard Walden},
  title = 	 {Identification and role of adenylyl cyclase in auxin signalling in higher plants},
  journal = 	 {Nature},
  year = 	 1998,
  volume =	 396,
  pages =	 390,
  note =         {Retraction}
}

###########################################################################
# Cyclic Nucleotides

@Article{walden98:_cyclic_nucleotides,
  author = 	 {Richard Walden},
  title = 	 {The alphabet soup of plant intracellular signalling: enter cyclic nucleotides},
  journal = 	 {Current Opinion in Plant Biology},
  year = 	 1998,
  volume =	 1,
  number =	 5,
  pages =	 {419--423},
  abstract =	 {Recent work reveals a role for cyclic nucleotides as secondary signalling molecules in a variety of signal transduction pathways in plants. Evidence is accumulating that cGMP is involved in signalling during photomorphogenesis and that cADP-ribose triggers the release of sequestered Ca$^{2+}$ during the response of plant cells to abscisic acid. Though more tentative, cAMP has been proposed as playing an important role in ion channel activity and cell cycle progression. Taken together, a picture emerges of differing signalling pathways, possibility interacting with each other, acting on an array of developmental processes. }
}

@article{neuhaus97:_phytochrome_cgmp,
author = {Neuhaus, Gunther and Bowler, Chris and Hiratsuka, Kazuyuki and Yamagata, Hiroshi and Chua, Nam-Hai},
title = {Phytochrome-regulated repression of gene expression requires calcium and cGMP},
journal = {EMBO J.},
volume = 16,
number = 10,
pages = {2554-2564},
year = 1997,
abstract = {},
URL = {http://emboj.oupjournals.org/cgi/content/abstract/16/10/2554},
eprint = {http://emboj.oupjournals.org/cgi/reprint/16/10/2554.pdf}
}

@article{leng99:_cng_cation_channel,
author = {Leng, Qiang and Mercier, Richard W. and Yao, Weizhe and Berkowitz, Gerald A.},
title = {{Cloning and First Functional Characterization of a Plant Cyclic Nucleotide-Gated Cation Channel}},
journal = {Plant Physiol.},
volume = 121,
number = 3,
pages = {753-761},
year = 1999,
abstract = {Cyclic nucleotide-gated (cng) non-selective cation channels have been cloned from a number of animal systems. These channels are characterized by direct gating upon cAMP or cGMP binding to the intracellular portion of the channel protein, which leads to an increase in channel conductance. Animal cng channels are involved in signal transduction systems; they translate stimulus-induced changes in cytosolic cyclic nucleotide into altered cell membrane potential and/or cation flux as part of a signal cascade pathway. Putative plant homologs of animal cng channels have been identified. However, functional characterization (i.e. demonstration of cyclic-nucleotide-dependent ion currents) of a plant cng channel has not yet been accomplished. We report the cloning and first functional characterization of a plant member of this family of ion channels. The Arabidopsis cDNA AtCNGC2 encodes a polypeptide with deduced homology to the [alpha]-subunit of animal channels, and facilitates cyclic nucleotide-dependent cation currents upon expression in a number of heterologous systems. AtCNGC2 expression in a yeast mutant lacking a low-affinity K+ uptake system complements growth inhibition only when lipophilic cyclic nucleotides are present in the culture medium. Voltage clamp analysis indicates that Xenopus laevis oocytes injected with AtCNGC2 cRNA demonstrate cyclic-nucleotide-dependent, inward-rectifying K+ currents. Human embryonic kidney cells (HEK293) transfected with AtCNGC2 cDNA demonstrate increased permeability to Ca$^{2+}$ only in the presence of lipophilic cyclic nucleotides. The evidence presented here supports the functional classification of AtCNGC2 as a cyclic-nucleotide-gated cation channel, and presents the first direct evidence (to our knowledge) identifying a plant member of this ion channel family.
},
URL = {http://www.plantphysiol.org/cgi/content/abstract/121/3/753},
eprint = {http://www.plantphysiol.org/cgi/reprint/121/3/753.pdf}
}

@Article{bowler94:_cgmp_phya,
  author = 	 {Bowler, C and Neuhaus, G and Yamagata, H and Chua, NH},
  title = 	 {Cyclic GMP and calcium mediate phytochrome phototransduction},
  journal = 	 {Cell},
  year = 	 1994,
  volume =	 77,
  pages =	 {73--81}
}


@Article{li94:_camp_guard_cells,
  author = 	 {Li, WW and Luan, S and Schreiber, SL and Assmann, SM},
  title = 	 {Cyclic AMP stimulates K$^+$ channel activity in mesophyll cells of \emph{Vicia faba}},
  journal = 	 {Plant Physiol},
  year = 	 1994,
  volume =	 106,
  pages =	 {957--961}
}

@Article{pfeiffer94:_cgmp_spruce_needles,
  author = 	 {Pfeiffer, S and Janistyn, B and Jessner, G and Pichorner, H and Ebermann, R},
  title = 	 {Gaseous nitric oxide stimulates guanosine--3',5'--cyclic monophosphate (cGMP) formation in spruce needles},
  journal = 	 {Phytochemistry},
  year = 	 1994,
  volume =	 36,
  pages =	 {259--262}
}

@Article{minorsky03:_cgmp_overview,
  author = 	 {Peter V. Minorsky},
  title = 	 {The Hot and the Classic},
  journal = 	 {Plant Physiology},
  year = 	 2003,
  volume =	 131,
  pages =	 {1578--1579},
  month =	 {April}
}

###########################################################################
# LRR Proteins

@article{suzuki90:_leucin_rich_repeat_carbox_termin,
author = {Suzuki, N and Choe, H and Nishida, Y and Yamawaki-Kataoka, Y and Ohnishi, S and Tamaoki, T and Kataoka, T},
title = {{Leucine-Rich Repeats and Carboxyl Terminus are Required for Interaction of Yeast Adenylate Cyclase with RAS Proteins}},
journal = {PNAS},
volume = 87,
number = 22,
pages = {8711-8715},
year = 1990,
abstract = {A Saccharomyces cerevisiae gene encoding adenylate cyclase has been analyzed by deletion and insertion mutagenesis to localize regions required for activation by the Sa. cerevisiae RAS2 protein. The NH2-terminal 657 amino acids were found to be dispensable for the activation. However, almost all 2-amino acid insertions in the middle 600 residues comprising leucine-rich repeats and deletions in the COOH-terminal 66 residues completely abolished activation by the RAS2 protein, whereas insertion mutations in the other regions generally had no effect. Chimeric adenylate cyclases were constructed by swapping the upstream and downstream portions surrounding the catalytic domains between the Sa. cerevisiae and Schizosaccharomyces pombe adenylate cyclases and examined for activation by the RAS2 protein. We found that the fusion containing both the NH2-terminal 1600 residues and the COOH-terminal 66 residues of the Sa. cerevisiae cyclase rendered the catalytic domain of the Sc. pombe cyclase, which otherwise did not respond to RAS proteins, activatable by the RAS2 protein. Thus the leucine-rich repeats and the COOH terminus of the Sa. cerevisiae adenylate cyclase appear to be required for interaction with RAS proteins.},
URL = {http://www.pnas.org/cgi/content/abstract/87/22/8711},
eprint = {http://www.pnas.org/cgi/reprint/87/22/8711.pdf}
}


###########################################################################
# PHOSPHLIPID SIGNALLING

@Article{munnik98:_pl_signalling_plants,
  author = 	 {Munnik, T. and Irvine, R.F. and Musgrave, A.},
  title = 	 {Phospholipid signalling in plants},
  journal = 	 {Biochimica et Biophysica Acta},
  year = 	 1998,
  volume =	 1389,
  pages =	 {222--272}
}

@Article{munnik01:_pa_plants,
  author = 	 {Teun Munnik},
  title = 	 {Phosphatic acid: an emerging plant lipid second messenger},
  journal = 	 {TRENDS in Plant Science},
  year = 	 2001,
  volume =	 6,
  number =	 5,
  pages =	 {227--233}
}

@Article{berridge93:_ip3_ca,
  author = 	 {Michael J. Berridge},
  title = 	 {Inositol trisphosphate and calcium signalling},
  journal = 	 {Nature},
  year = 	 1993,
  volume =	 361,
  number =	 {315--325},
  abstract =	 {Inositol trisphosphate is a second messenger that controls many cellular processes by generating internal calcium signals. It operates through receptors whose molecular and physiological properties closely resemble the calcium-mobilizing ryanodine receptors of muscle. This family of intracellular calcium channels displays the regenerative process of calcium-induced calcium release responsible for the complex spatiotemporal patterns of calcium waves and oscillations. Such a dynamic signalling pathway controls many cellular processes, including fertilization, cell growth, transformation, secretion, smooth muscle contraction, sensory perception and neuronal signalling.},
  annote =	 {review article}
}

@Article{nishizuka95:_pkc,
  author = 	 {Nishizuka, Y.},
  title = 	 {Protein kinase C and lipid signaling for sustained cellular responses},
  journal = 	 {FASEB J},
  year = 	 1995,
  volume =	 9,
  number =	 7,
  pages =	 {484--96},
  abstract =	 {Since the second messenger role was proposed for the products of inositol phospholipid hydrolysis, considerable progress has been made in our understanding of the biochemical mechanism of the intracellular signaling network. It is now becoming evident that stimulation of a cell surface receptor initiates a degradation cascade of various membrane lipid constituents. Many of their metabolites have potential to induce, intensify, and prolong the activation of protein kinase C that is needed for sustained cellular responses.},
  annote =	 {Review}
}

@article{chandok98:_pkc_maize,
author = {Chandok, Meena R. and Sopory, Sudhir K.},
title = {{ZmcPKC70, a Protein Kinase C-type Enzyme from Maize. BIOCHEMICAL CHARACTERIZATION, REGULATION BY PHORBOL 12-MYRISTATE 13-ACETATE AND ITS POSSIBLE INVOLVEMENT IN NITRATE REDUCTASE GENE EXPRESSION}},
journal = {J. Biol. Chem.},
volume = 273,
number = 30,
pages = {19235--19242},
year = 1998,
abstract = {The crucial enzyme in diacylglycerol-mediated signaling is protein kinase C (PKC). In this paper we provide evidence for the existence and role of PKC in maize. A protein of an apparent molecular mass of 70 kDa was purified. The protein showed kinase activity that was stimulated by phosphatidylserine and oleyl acetyl glycerol (OAG) in the presence of Ca2+. Phorbol 12-myristate 13-acetate (PMA) replaced the requirement of OAG. [3H]PMA binding to the 70-kDa protein was competed by unlabeled PMA and OAG but not by 4[alpha]-PMA, an inactive analog. The kinase phosphorylates histone H1 at serine residue(s), and this activity was inhibited by H-7 and staurosporine. These properties suggest that the 70-kDa protein is a conventional serine/threonine protein kinase C (cPKC). Polyclonal antibodies raised against the polypeptide precipitate the enzyme activity and immunostained the protein on Western blots. The antibodies also cross-reacted with a protein of expected size from sorghum, rice, and tobacco. A rapid increase in the protein level was observed in maize following PMA treatments. In order to assign a possible role of PKC in gene regulation, the nitrate reductase transcript level was investigated. The transcript level increased by PMA, not by 4[alpha]-PMA treatments, and the increase was inhibited by H-7 but not by okadaic acid. The data show the existence and possible function of PKC in higher plants.
},
URL = {http://www.jbc.org/cgi/content/abstract/273/30/19235},
eprint = {http://www.jbc.org/cgi/reprint/273/30/19235.pdf}
}

@Article{mccarthy00:_conservation_innovation_plant_signaling,
  author = 	 {McCarthy, D. R. and Chory, J.},
  title = 	 {Conservation and innovation in plant signaling pathways},
  journal = 	 {Cell},
  year = 	 2000,
  volume =	 103,
  pages =	 {201--211}
}

@article{munnik95:_pld,
author = {Munnik, T. and Arisz, S. A. and de Vrije, T. and Musgrave, A.},
title = {G Protein Activation Stimulates Phospholipase D Signaling in Plants},
journal = {Plant Cell},
volume = 7,
number = 12,
pages = {2197--2210},
year = 1995,
abstract = {We provide direct evidence for phospholipase D (PLD) signaling in plants by showing that this enzyme is stimulated by the G protein activators mastoparan, ethanol, and cholera toxin. An in vivo assay for PLD activity in plant cells was developed based on the use of a "reporter alcohol" rather than water as a transphosphatidylation substrate. The product was a phosphatidyl alcohol, which, in contrast to the normal product phosphatidic acid, is a specific measure of PLD activity. When 32P-labeled cells were treated with 0.1\% n-butanol, 32P-phosphatidyl butanol (32P-PtdBut) was formed in a time-dependent manner. In cells treated with any of the three G protein activators, the production of 32P-PtdBut was increased in a dose-dependent manner. The G protein involved was pertussis toxin insensitive. Ethanol could activate PLD but was itself consumed by PLD as transphosphatidylation substrate. In contrast, secondary alcohols (e.g., sec-butyl alcohol) activated PLD but did not function as substrate, whereas tertiary alcohols did neither. Although most of the experiments were performed with the green alga Chlamydomonas eugametos, the relevance for higher plants was demonstrated by showing that PLD in carnation petals could also be activated by mastoparan. The results indicate that PLD activation must be considered as a potential signal transduction mechanism in plants, just as in animals.},
URL = {http://www.plantcell.org/cgi/content/abstract/7/12/2197},
eprint = {http://www.plantcell.org/cgi/reprint/7/12/2197.pdf}
}

@Article{ryu96:_activation_pld,
  author = 	 {Stephen B. Ryu and Wang Xuemin},
  title = 	 {Activation of phospholipase D and the possible mechanism of activation in wound-induced lipid hydrolysis in castor bean leaves},
  journal = 	 {Biochimica et Biophysica Acta},
  year = 	 1996,
  volume =	 1303,
  number =	 3,
  pages =	 {243--250},
  abstract =	 {Hydrolysis of membrane lipids has been suggested to provide messengers mediating defense gene expression in the wound signaling process. It is, however, unknown which lipolytic enzyme is involved in the signaling pathway. This study investigated the temporal and spatial activation of phospholipase D (PLD; EC 3.1.4.4) and the possible activation mechanism in response to wounding in castor bean (Ricinus communis L.) leaves. Wounding triggered a rapid activation of PLD-mediated phospholipid hydrolysis, as indicated by the in vivo increase in phosphatidic acid and free choline, at not only the site of wounding but also the undamaged area of wounded leaves. RNA blotting analysis indicated that PLD gene expression was not involved in the early phase of wounding-activation of PLD. Measurements of PLD by activity assay and immunoblotting suggest that the wounding-activation of PLD at unwounded cells results from intracellular translocation of PLD from cytosol to membranes. A similar translocation pattern of PLD was also obtained as a function of increased free calcium at physiological concentrations in a homogenization buffer. Based on the above results, it is proposed that wounding induces activation of PLD leading to phospholipid hydrolysis, and that the activation results from translocation of PLD to membranes, which is mediated by an increase in cytoplasmic calcium upon wounding.}
}


@Article{ryu98:_pld_wound,
  author = 	 {Stephen B. Ryu and Xuemin Wang},
  title = 	 {Increase in free linolenic and linoleic acids associated with phospholipase D-mediated hydrolysis of phospholipids in wounded castor bean leaves},
  journal = 	 {Biochimica et Biophysica Acta},
  year = 	 1998,
  volume =	 1393,
  number =	 1,
  pages =	 {193--202},
  abstract =	 {Stimulus-induced release of polyunsaturated fatty acids from membranes has been proposed to couple the processes of stimulus perception and oxylipin synthesis in the octadecanoid signaling pathway. This study investigated wound-induced changes in free fatty acids, diacylglycerol, and phospholipids at the site of wounding and at an unwounded area of the same wounded leaf in castor bean (Ricinus communis L.). Increases in free fatty acids and diacylglycerol and decreases in phospholipids were relatively large and continuous at the site of wounding. The changes at the unwounded area were selective and transient, suggesting a regulated activation of lipid turnover in response to wounding. In unwounded cells, the free fatty acids that increased in the early phase of wounding were linolenate and linoleate, which peaked within 5 min after wounding. Diacylglycerols that increased in unwounded cells were the species containing linolenate and linoleate, not those with oleate and stearate. Within 5 min of wounding, the levels of phosphatidylcholine and phosphatidylglycerol, but not other phospholipids, decreased in unwounded cells. These results provide evidence for the wound-induced selective increase in linolenate and linoleate in unwounded cells. The varied susceptibility of different phospholipids to hydrolysis after wounding indicates that phosphatidylcholine and phosphatidylglycerol may serve as substrates that lead to the increase in linolenate and linoleate in the early phase of wound response. The pattern of increases in polyunsaturated fatty acids, diacylglycerol, and phosphatidic acid and of decreases in phospholipids suggests the activation of a PLD-initiated signaling pathway in response to wounding in castor bean.}
}

@article{young96:_pld,
author = {Young, S. A. and Wang, X. and Leach, J. E.},
title = {Changes in the Plasma Membrane Distribution of Rice Phospholipase D during Resistant Interactions with Xanthomonas oryzae pv oryzae},
journal = {Plant Cell},
volume = 8,
number = 6,
pages = {1079--1090},
year = 1996,
abstract = {},
URL = {http://www.plantcell.org/cgi/content/abstract/8/6/1079},
eprint = {http://www.plantcell.org/cgi/reprint/8/6/1079.pdf}
}


###########################################################################
# MAPK CASCADE

@Article{wrzaczek01:_plant_mapk,
  author = 	 {Michael Wrzaczek and Heribert Hirt},
  title = 	 {Plant MAP kinase pathways: how many and what for?},
  journal = 	 {Biology of the Cell},
  year = 	 2001,
  volume =	 93,
  pages =	 {81--87}
}

@Article{tena01:_plant_mapk,
  author = 	 {Guillaume Tena and Tsuneaki Asai and Wan--Ling Chiu and Jen Sheen},
  title = 	 {Plant mitogen--activated protein kinase signaling cascades},
  journal = 	 {Curr. Opin. Plant Biol.},
  year = 	 2001,
  volume =	 4,
  pages =	 {392--400}
}

@Book{hirt00:_mapk_plant_st,
  editor =	 {Hirt, H},
  title = 	 {Results and Problems in Cell Differentiation: MAP Kinases in Plant Signal Transduction},
  publisher = 	 {Springer},
  year = 	 2000,
  address =	 {Heidelberg}
}

@Article{chang01:_mammal_mapk,
  author = 	 {Lufen Chang and Michael Karin},
  title = 	 {Mammalian MAP kinase signalling cascades},
  journal = 	 {Nature},
  year = 	 2001,
  volume =	 410,
  pages =	 {37--40},
  abstract =	 {Mitogen-activated protein kinases (MAPKs) are important signal transducing enzymes, unique to eukaryotes, that are involved in many facets of cellular regulation. Initial research concentrated on defining the components and organization of MAPK signalling cascades, but recent studies have begun to shed light on the physiological functions of these cascades in the control of gene expression, cell proliferation and programmed cell death.}
}

@Article{bent01:_plant_mapk_cascade,
  author = 	 {Andrew F. Bent},
  title = 	 {Plant mitogen--activated protein kinase cascade: Negative regulatory roles turn out positive},
  journal = 	 {Proc. Natl. Acad. Sci. USA},
  year = 	 2001,
  volume =	 98,
  number =	 3,
  pages =	 {784--786}
}

@article{hardie99:_plant_pk,
author = {Hardie,D. G.},
title = {PLANT PROTEIN SERINE/THREONINE KINASES: Classification and Functions},
journal = {Annual Review of Plant Physiology and Plant Molecular Biology},
volume = 50,
number = 1,
pages = {97-131},
year = 1999,
URL = {http://arjournals.annualreviews.org/doi/abs/10.1146/annurev.arplant.50.1.97},
eprint = {http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.arplant.50.1.97}
}

@article{reymond00:_differ_gene_expres_respon_mechan,
author = {Reymond, Philippe and Weber, Hans and Damond, Martine and Farmer, Edward E.},
title = {Differential Gene Expression in Response to Mechanical Wounding and Insect Feeding in Arabidopsis},
journal = {Plant Cell},
volume = 12,
number = 5,
pages = {707-720},
year = 2000,
abstract = {Wounding in multicellular eukaryotes results in marked changes in gene expression that contribute to tissue defense and repair. Using a cDNA microarray technique, we analyzed the timing, dynamics, and regulation of the expression of 150 genes in mechanically wounded leaves of Arabidopsis. Temporal accumulation of a group of transcripts was correlated with the appearance of oxylipin signals of the jasmonate family. Analysis of the coronatine-insensitive coi1-1 Arabidopsis mutant that is also insensitive to jasmonate allowed us to identify a large number of COI1-dependent and COI1-independent wound-inducible genes. Water stress was found to contribute to the regulation of an unexpectedly large fraction of these genes. Comparing the results of mechanical wounding with damage by feeding larvae of the cabbage butterfly (Pieris rapae) resulted in very different transcript profiles. One gene was specifically induced by insect feeding but not by wounding; moreover, there was a relative lack of water stress-induced gene expression during insect feeding. These results help reveal a feeding strategy of P. rapae that may minimize the activation of a subset of water stress-inducible, defense-related genes.
},
URL = {http://www.plantcell.org/cgi/content/abstract/12/5/707},
eprint = {http://www.plantcell.org/cgi/reprint/12/5/707.pdf}
}

@article{pieterse98:_novel_signal_pathw_contr_induc,
author = {Pieterse, Corne M. J. and van Wees, Saskia C. M. and van Pelt, Johan A. and Knoester, Marga and Laan, Ramon and Gerrits, Han and Weisbeek, Peter J. and van Loon, Leendert C.},
title = {A Novel Signaling Pathway Controlling Induced Systemic Resistance in Arabidopsis},
journal = {Plant Cell},
volume = 10,
number = 9,
pages = {1571-1580},
year = 1998,
abstract = {Plants have the ability to acquire an enhanced level of resistance to pathogen attack after being exposed to specific biotic stimuli. In Arabidopsis, nonpathogenic, root-colonizing Pseudomonas fluorescens bacteria trigger an induced systemic resistance (ISR) response against infection by the bacterial leaf pathogen P. syringae pv tomato. In contrast to classic, pathogen-induced systemic acquired resistance (SAR), this rhizobacteria-mediated ISR response is independent of salicylic acid accumulation and pathogenesis-related gene activation. Using the jasmonate response mutant jar1, the ethylene response mutant etr1, and the SAR regulatory mutant npr1, we demonstrate that signal transduction leading to P. fluorescens WCS417r-mediated ISR requires responsiveness to jasmonate and ethylene and is dependent on NPR1. Similar to P. fluorescens WCS417r, methyl jasmonate and the ethylene precursor 1-aminocyclopropane-1-carboxylate were effective in inducing resistance against P. s. tomato in salicylic acid-nonaccumulating NahG plants. Moreover, methyl jasmonate-induced protection was blocked in jar1, etr1, and npr1 plants, whereas 1-aminocyclopropane-1-carboxylate-induced protection was affected in etr1 and npr1 plants but not in jar1 plants. Hence, we postulate that rhizobacteria-mediated ISR follows a novel signaling pathway in which components from the jasmonate and ethylene response are engaged successively to trigger a defense reaction that, like SAR, is regulated by NPR1. We provide evidence that the processes downstream of NPR1 in the ISR pathway are divergent from those in the SAR pathway, indicating that NPR1 differentially regulates defense responses, depending on the signals that are elicited during induction of resistance.
},
URL = {http://www.plantcell.org/cgi/content/abstract/10/9/1571},
eprint = {http://www.plantcell.org/cgi/reprint/10/9/1571.pdf}
}

@article{schenk00:_coord_arabid,
author = {Schenk, Peer M. and Kazan, Kemal and Wilson, Iain and Anderson, Jonathan P. and Richmond, Todd and Somerville, Shauna C. and Manners, John M.},
title = {Coordinated plant defense responses in Arabidopsis revealed by microarray analysis},
journal = {PNAS},
volume = 97,
number = 21,
pages = {11655-11660},
year = 2000,
abstract = {},
URL = {http://www.pnas.org/cgi/content/abstract/97/21/11655},
eprint = {http://www.pnas.org/cgi/reprint/97/21/11655.pdf}
}

bib/pflph.txt · Zuletzt geändert: 2020/09/30 21:34 von 127.0.0.1